18.Ge, H., Qian, H. and Xie, X.S.: Stochastic phenotype transition of a single cell in an intermediate region of gene state switching. Phys. Rev. Lett. 114, 078101 (2015)
17. Chong, S.S., Chen, C.Y., Ge, H. and Xie, X.S.: Mechanism of transcriptional bursting in bacteria. Cell 158, 314–326 (2014)
16. Ge, H.: Time reversibility and nonequilibrium thermodynamics of second-order stochastic processes. Phys. Rev. E 89, 022127 (2014)
15. Kim, S., Broströmer, E., Xing, D., Jin, J.S., Chong, S.S., Ge, H., Wang, S.Y., Gu, C., Yang, L., Gao, Y.Q., Su, X.D., Sun, Y.J. & Xie, X.S.: Probing allostery through DNA. Science 339 816 (2013)
14. Xu, X.L., Ge, H., Gu, C., Gao, Y. Q., Wang, S.Y., Thio, B., Hynes, J., Xie, X.S. and Cao, J.S.: Modeling spatial correlation of DNA deformation: DNA allostery in protein binding. J. Phys. Chem. B 117, 13378−13387 (2013) (co-first-author)
13. Ge, H.: Multivariable fluctuation theorems in the steady-state cycle kinetics of single enzyme with competing substrates. J. Phys. A: Math. Theor. 45 215002 (2012) (Research highlighted)
12. Ge, H. and Qian, H.: Landscapes of nongradient dynamics without detailed balance: stable limit cycles and multiple attractors. Chaos: An interdisciplinary journal of nonlinear science 22, 023140 (2012)
11. Ge, H., Pressé, S., Ghosh, K. and Dill, K.: Markov processes follow from the principle of maximum caliber. J. Chem. Phys. 136, 064108 (2012) (highlighted by the journal)
10. Ge, H., Qian, M. and Qian,H.: Stochastic theory of nonequilibrium steady states. Part II: Applications in chemical biophysics. Phys. Rep. 510, 87-118 (2012)
9. Hao Ge, Hong Qian. Nonequilibrium phase transition in a mesoscoipic biochemical system: From stochastic to nonlinear dynamics and beyond. Journal of Royal Society Interface 2011, 8, 107-116.
8. Hao Ge, Hong Qian. The physical origins of entropy production, free energy dissipation and their mathematical representations. Physical Review E 2010, 81, 051133.
7. Hao Ge, Min Qian. Boolean network approach to negative feedback loops of the p53 pathways: Synchronized dynamics and stochastic limit cycles. Journal of Computational Biology 2009, 16, 119-132.
6. Hao Ge. Extended forms of the second law for general time-dependent stochastic processes. Physical Review E 2009, 80, 021137.
5. Hao Ge, Hong Qian. Thermodynamic limit of a nonequilibrium steady state: Maxwell-type construction for a bistable biochemical system. Physical Review Letters 2009, 103, 148103.
4. Ge, H., Qian, H. and Qian, M.: Synchronized dynamics and nonequilibrium steady states in a yeast cell-cycle network. Mathematical Bioscience 2008, 211, 132-152.
3. Hao Ge. Waiting cycle times and generalized Haldane equality in the steady-state cycle kinetics of single enzymes. Journal of Physical Chemistry B 2008, 112, 61-70.
2. Hao Ge, Daquan Jiang. Generalized Jarzynskis equality of multidimensional inhomogeneous diffusion processes. Journal of Statistical Physics 2008, 131, 675-689.
1. Hao Ge, Min Qian. Sensitivity amplification in the phosphorylation-dephosphorylation cycle: nonequilibrium steady states, chemical master equation and temporal cooperativity. Journal of Chemical Physics 2008, 129, 015104.